Sequence Ontology

A shared vocabulary for biological sequence features and annotations

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NMD_transcript_variant

SO:0001621

Definition: A variant in a transcript that is the target of nonsense-mediated mRNA decay.

Comments and references

Definition references: SO:ke

Synonyms

ScopeValue
exactNMD transcript variant
exactNMD_transcript
exactNonsense mediated decay transcript variant
exactVEP:NMD_transcript_variant

Identifiers and subsets

Accession: SO:0001621

Persistent URL: http://purl.obolibrary.org/obo/SO_0001621

Alternate IDs: None

Subsets: None

Cross references: http:www.ensembl.org/info/genome/variation/predicted_data.html#consequences

History summary

Term history is reconstructed from the Git-era ontology files by comparing ontology classes across revisions. Earlier SVN-era changes will be added at a future date.

First seen in Git-era editable history: 2016-12-05 in commit 92e3cae

Most recent Git-era change: 2020-05-27 in commit b13f9f0

Number of changes: 4

Ontology neighborhood diagram

Ontology neighborhood for SO:0001621 Ontology neighborhood graph for SO:0001621 NMD_transcript_variant. Parent, child, and related nodes can be activated to open their term pages. SO:0001576 transcript_variant SO:0001576 transcript_variant SO:0001621 NMD_transcript_variant SO:0001621 NMD_transcript_variant
The local DAG shows nearby parent, child, and related terms. Each node links to its own term page.

Relationships

Parents

Children

None recorded in the current release neighborhood.

Change history

This timeline summarizes changes identified in SO’s GitHub commit history, including updates to labels, definitions, parent terms, synonyms, subsets, and obsoletion status. It is a best-effort reconstruction and may not include every change to a term. Since only history from GitHub is included at the moment, any term added before the migration from SVN to Git will show as being created in 2016. This will be addressed once SVN history is incorporated.

DateChangeSummaryEvidence
2020-05-27editedTerm stanza touched in repository historyb13f9f0
2020-04-14synonym addedSynonym added: Nonsense mediated decay transcript variant
Scope: exact
0cc3c89
#446
2020-04-14definition changedDefinition updated
Before: A variant in a transcript that is the target of NMD.
After: A variant in a transcript that is the target of nonsense-mediated mRNA decay.
0cc3c89
#446
2016-12-05createdTerm introduced into the editable ontology history
Initial label: NMD_transcript_variant
Initial definition captured.
Initial parent: SO:0001576
92e3cae