Sequence Ontology

A shared vocabulary for biological sequence features and annotations

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inframe_deletion

SO:0001822

Definition: An inframe non synonymous variant that deletes bases from the coding sequence.

Comments and references

Definition references: EBI:gr

Synonyms

ScopeValue
exactANNOVAR:nonframeshift deletion
exactJannovar:inframe_deletion
exactVAT:deletionNFS
exactVEP:inframe_deletion
exactinframe decrease in CDS length
exactinframe_codon_loss
relatedinframe codon loss
relatedinframe deletion
relatedsnpEff:CODON_DELETION

Identifiers and subsets

Accession: SO:0001822

Persistent URL: http://purl.obolibrary.org/obo/SO_0001822

Alternate IDs: SO:0001652

Subsets: None

Cross references: http://snpeff.sourceforge.net/SnpEff_manual.html, http://vat.gersteinlab.org/formats.php, http:www.ensembl.org/info/genome/variation/predicted_data.html#consequences

History summary

Term history is reconstructed from the Git-era ontology files by comparing ontology classes across revisions. Earlier SVN-era changes will be added at a future date.

First seen in Git-era editable history: 2016-12-05 in commit 92e3cae

Most recent Git-era change: 2016-12-05 in commit 92e3cae

Number of changes: 1

Ontology neighborhood diagram

Ontology neighborhood for SO:0001822 Ontology neighborhood graph for SO:0001822 inframe_deletion. Parent, child, and related nodes can be activated to open their term pages. SO:0001906 feature_truncation SO:0001906 feature_truncation SO:0001820 inframe_indel SO:0001820 inframe_indel SO:0001822 inframe_deletion SO:0001822 inframe_deletion SO:0001826 disruptive_inframe_deletion SO:0001826 disruptive_inframe_deletion SO:0001825 conservative_inframe_deletion SO:0001825 conservative_inframe_deletion
The local DAG shows nearby parent, child, and related terms. Each node links to its own term page.

Relationships

Parents

Children

Change history

This timeline summarizes changes identified in SO’s GitHub commit history, including updates to labels, definitions, parent terms, synonyms, subsets, and obsoletion status. It is a best-effort reconstruction and may not include every change to a term. Since only history from GitHub is included at the moment, any term added before the migration from SVN to Git will show as being created in 2016. This will be addressed once SVN history is incorporated.

DateChangeSummaryEvidence
2016-12-05createdTerm introduced into the editable ontology history
Initial label: inframe_deletion
Initial definition captured.
Initial parents: SO:0001820, SO:0001906
92e3cae