The Sequence Ontology - Resources

June 2010 Release 2.4.3 available.
May 2010 SOBA paper available from Nucleic Acids Research.
April 2010 Release 2.4.2 available.
March 2010 New SO paper out: 'Evolution of the Sequence Ontology terms and relationships' in the Journal of Biomedical Informatics. A pre-print of this paper is available here.
February 2010: Sequence Ontology Bioinformatics Analysis (SOBA) is available. Genome annotations in GFF3 can be uploaded and analysed.
2009 December Release 2.4.1 available.
2009 October Release 2.4 available.
2009 July SO presented at the International Conference of Biomedical Ontology.
2009 June Chris Conley -Undergrad from BYU joins SO for the summer
2009 May Graduate student, John Naylor joins SO.
2009 February 22: A new SO related paper Quantitative Measures for the Management and Comparison of Annotated Genomes K Eilbeck et. al.
2009 January 4-6: SO represented at the RNA Ontology consortium meeting in Cambridge UK.
2008 December 1: A paper from the BioSapiens project describing protein features in SO is published. The Protein Feature Ontology: A tool for the unification of protein feature annotations. GA Reeves et. al.

The Sequence Ontology: A tool for the unification of genome annotations. Eilbeck K., Lewis S., Mungall C.J., Yandell M., Stein L., Durbin R., Ashburner M. Genome Biology (2005) 6:R44

Sequence Ontology Annotation Guide. Eilbeck K. and Lewis S. Comparative and Functional Genomics (2004) 5:642-647

Quantitative Measures for the Management and Comparison of Annotated Genomes. Eilbeck K., Moore B., Holt C., Yandell M. BMC Bioinformatics 2009, 10:67

The Protein Feature Ontology: a tool for the unification of protein feature annotations. Reeves G.A., Eilbeck K., Magrane M., O'Donovan C., Montecchi-Palazzi L., Harris M.A., Orchard S., Jimenez R.C., Prlic A., Hubbard T.J., Hermjakob H., Thornton J.M. Bioinformatics. 2008 Dec 1; 24(23):2767-72

A Chado case study: an ontology-based modular schema for representing genome-associated biological information Christopher J. Mungall 1, David B. Emmert, and The FlyBase Consortium. Bioinformatics 2007 23(13):i337-i346; doi:10.1093/bioinformatics/btm189

Evolution of the Sequence Ontology terms and relationships Karen Eilbeck and Christopher J. Mungall. International Conference for Biomedical Ontology 2009