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Sequence Ontology Publications

A standard variation file format for human genome sequences Reese MG, Moore B, Batchelor C, Salas F, Cunningham F, Marth GT, Stein L, Flicek P, Yandell M, Eilbeck K Genome Biology 2010, 11:R88
SOBA: sequence ontology bioinformatics analysis Moore B, Fan G, Eilbeck K Nucl Acids Res 2010, 38(suppl 2)
Evolution of the Sequence Ontology terms and relationships Mungall, C. J. Batchelor C. Eilbeck K. J Biomed Inform. 2010 Mar 10
Quantitative Measures for the Management and Comparison of Annotated Genomes. Eilbeck K., Moore B., Holt C., Yandell M. BMC Bioinformatics 2009, 10:67
The Protein Feature Ontology: a tool for the unification of protein feature annotations. Reeves G.A., Eilbeck K., Magrane M., O'Donovan C., Montecchi-Palazzi L., Harris M.A., Orchard S., Jimenez R.C., Prlic A., Hubbard T.J., Hermjakob H., Thornton J.M. Bioinformatics. 2008 Dec 1; 24(23):2767-72
A Chado case study: an ontology-based modular schema for representing genome-associated biological information Christopher J. Mungall 1, David B. Emmert, and The FlyBase Consortium. Bioinformatics 2007 23(13):i337-i346
The Sequence Ontology: A tool for the unification of genome annotations. Eilbeck K., Lewis S., Mungall C.J., Yandell M., Stein L., Durbin R., Ashburner M. Genome Biology (2005) 6:R44
Sequence Ontology Annotation Guide. Eilbeck K. and Lewis S. Comparative and Functional Genomics (2004) 5:642-647