Sequence Ontology

A shared vocabulary for biological sequence features and annotations

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non_coding_transcript_variant

SO:0001619

Definition: A transcript variant of a non coding RNA gene.

Comments and references

Within non-coding gene - Located within a gene that does not code for a protein.

Definition references: SO:ke

Synonyms

ScopeValue
exactJannovar:non_coding_transcript_variant
exactVEP:non_coding_transcript_variant
exactnc transcript variant
exactnon coding transcript variant
exactwithin_non_coding_gene
narrowANNOVAR:ncRNA

Identifiers and subsets

Accession: SO:0001619

Persistent URL: http://purl.obolibrary.org/obo/SO_0001619

Alternate IDs: None

Subsets: None

Cross references: http:www.ensembl.org/info/genome/variation/predicted_data.html#consequences

History summary

Term history is reconstructed from the Git-era ontology files by comparing ontology classes across revisions. Earlier SVN-era changes will be added at a future date.

First seen in Git-era editable history: 2016-12-05 in commit 92e3cae

Most recent Git-era change: 2016-12-05 in commit 92e3cae

Number of changes: 1

Ontology neighborhood diagram

Ontology neighborhood for SO:0001619 Ontology neighborhood graph for SO:0001619 non_coding_transcript_variant. Parent, child, and related nodes can be activated to open their term pages. SO:0001576 transcript_variant SO:0001576 transcript_variant SO:0001619 non_coding_transcript_variant SO:0001619 non_coding_transcript_variant SO:0001970 non_coding_transcript_intron_variant SO:0001970 non_coding_transcript_intron_variant SO:0001620 mature_miRNA_variant SO:0001620 mature_miRNA_variant SO:0002088 non_coding_transcript_splice_region_variant SO:0002088 non_coding_transcript_splice_region_variant SO:0001792 non_coding_transcript_exon_variant SO:0001792 non_coding_transcript_exon_variant
The local DAG shows nearby parent, child, and related terms. Each node links to its own term page.

Relationships

Parents

Children

Change history

This timeline summarizes changes identified in SO’s GitHub commit history, including updates to labels, definitions, parent terms, synonyms, subsets, and obsoletion status. It is a best-effort reconstruction and may not include every change to a term. Since only history from GitHub is included at the moment, any term added before the migration from SVN to Git will show as being created in 2016. This will be addressed once SVN history is incorporated.

DateChangeSummaryEvidence
2016-12-05createdTerm introduced into the editable ontology history
Initial label: non_coding_transcript_variant
Initial definition captured.
Initial parent: SO:0001576
92e3cae