Sequence Ontology

A shared vocabulary for biological sequence features and annotations

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CDS

SO:0000316

Definition: A contiguous sequence which begins with, and includes, a start codon and ends with, and includes, a stop codon.

Comments and references

Definition references: SO:ma

Synonyms

ScopeValue
exactINSDC_feature:CDS
exactcoding sequence
exactcoding_sequence

Identifiers and subsets

Accession: SO:0000316

Persistent URL: http://purl.obolibrary.org/obo/SO_0000316

Alternate IDs: None

Subsets: SOFA

Cross references: None

History summary

Term history is reconstructed from the Git-era ontology files by comparing ontology classes across revisions. Earlier SVN-era changes will be added at a future date.

First seen in Git-era editable history: 2016-12-05 in commit 92e3cae

Most recent Git-era change: 2018-01-26 in commit 5fe48bd

Number of changes: 2

Ontology neighborhood diagram

Ontology neighborhood for SO:0000316 Ontology neighborhood graph for SO:0000316 CDS. Parent, child, and related nodes can be activated to open their term pages. SO:0000836 mRNA_region SO:0000836 mRNA_region SO:0000316 CDS SO:0000316 CDS SO:1001254 CDS_predicted SO:1001254 CDS_predicted SO:0000935 edited_CDS SO:0000935 edited_CDS SO:1001246 CDS_independently_known SO:1001246 CDS_independently_known SO:0001384 CDS_fragment SO:0001384 CDS_fragment SO:0001896 transposable_element_CDS SO:0001896 transposable_element_CDS SO:0002227 CDS_extension SO:0002227 CDS_extension SO:0000104 polypeptide SO:0000104 polypeptide SO:0000851 CDS_region SO:0000851 CDS_region
The local DAG shows nearby parent, child, and related terms. Each node links to its own term page.

Relationships

Parents

Children

http://purl.obolibrary.org/obo/so#derives_from (incoming)

http://purl.obolibrary.org/obo/so#part_of (incoming)

Change history

This timeline summarizes changes identified in SO’s GitHub commit history, including updates to labels, definitions, parent terms, synonyms, subsets, and obsoletion status. It is a best-effort reconstruction and may not include every change to a term. Since only history from GitHub is included at the moment, any term added before the migration from SVN to Git will show as being created in 2016. This will be addressed once SVN history is incorporated.

DateChangeSummaryEvidence
2018-01-26synonym addedSynonym added: INSDC_feature:CDS
Scope: exact
5fe48bd
2016-12-05createdTerm introduced into the editable ontology history
Initial label: CDS
Initial definition captured.
Initial parent: SO:0000836
92e3cae