Sequence Ontology

A shared vocabulary for biological sequence features and annotations

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mature_protein_region

SO:0000419

Definition: The polypeptide sequence that remains when the cleaved peptide regions have been cleaved from the immature peptide.

Comments and references

This term mature peptide, merged with the biosapiens term mature protein region and took that to be the new name. Old def: The coding sequence for the mature or final peptide or protein product following post-translational modification.

Definition references: EBIBS:GAR, SO:cb, http://www.insdc.org/files/feature_table.html

Synonyms

ScopeValue
exactINSDC_feature:mat_peptide
exactmature protein region
relatedchain
relatedmature peptide

Identifiers and subsets

Accession: SO:0000419

Persistent URL: http://purl.obolibrary.org/obo/SO_0000419

Alternate IDs: BS:00149

Subsets: SOFA, biosapiens

Cross references: None

History summary

Term history is reconstructed from the Git-era ontology files by comparing ontology classes across revisions. Earlier SVN-era changes will be added at a future date.

First seen in Git-era editable history: 2016-12-05 in commit 92e3cae

Most recent Git-era change: 2020-07-01 in commit 2e01a41

Number of changes: 5

Ontology neighborhood diagram

Ontology neighborhood for SO:0000419 Ontology neighborhood graph for SO:0000419 mature_protein_region. Parent, child, and related nodes can be activated to open their term pages. SO:0000839 polypeptide_region SO:0000839 polypeptide_region SO:0000419 mature_protein_region SO:0000419 mature_protein_region SO:0001064 active_peptide SO:0001064 active_peptide SO:0002249 mature_protein_region_of_CDS SO:0002249 mature_protein_region_of_CDS SO:0001063 immature_peptide_region SO:0001063 immature_peptide_region
The local DAG shows nearby parent, child, and related terms. Each node links to its own term page.

Relationships

Parents

Children

http://purl.obolibrary.org/obo/so#derives_from (outgoing)

http://purl.obolibrary.org/obo/so#part_of (outgoing)

Change history

This timeline summarizes changes identified in SO’s GitHub commit history, including updates to labels, definitions, parent terms, synonyms, subsets, and obsoletion status. It is a best-effort reconstruction and may not include every change to a term. Since only history from GitHub is included at the moment, any term added before the migration from SVN to Git will show as being created in 2016. This will be addressed once SVN history is incorporated.

DateChangeSummaryEvidence
2020-07-01editedTerm stanza touched in repository history2e01a41
2020-05-27editedTerm stanza touched in repository historyb13f9f0
2020-05-13editedTerm stanza touched in repository history74ff3d6
#484
2018-01-26synonym addedSynonym added: INSDC_feature:mat_peptide
Scope: exact
5fe48bd
2016-12-05createdTerm introduced into the editable ontology history
Initial label: mature_protein_region
Initial definition captured.
Initial parent: SO:0000839
92e3cae