Sequence Ontology

A shared vocabulary for biological sequence features and annotations

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pseudogenic_transcript

SO:0000516

Definition: A non functional descendant of a transcript, part of a pseudogene.

Comments and references

This is the analog of the transcript of a functional gene. The term was requested by Rama - SGD to allow the annotation of the parts of a pseudogene. Non-functional is defined as either its transcription or translation (or both) are prevented due to one or more mutations.

Definition references: SO:ke

Synonyms

ScopeValue
exactINSDC_qualifier:pseudo
exactpseudogenic transcript
broadINSDC_feature:misc_RNA

Identifiers and subsets

Accession: SO:0000516

Persistent URL: http://purl.obolibrary.org/obo/SO_0000516

Alternate IDs: None

Subsets: None

Cross references: None

History summary

Term history is reconstructed from the Git-era ontology files by comparing ontology classes across revisions. Earlier SVN-era changes will be added at a future date.

First seen in Git-era editable history: 2016-12-05 in commit 92e3cae

Most recent Git-era change: 2018-01-26 in commit 5fe48bd

Number of changes: 3

Ontology neighborhood diagram

Ontology neighborhood for SO:0000516 Ontology neighborhood graph for SO:0000516 pseudogenic_transcript. Parent, child, and related nodes can be activated to open their term pages. SO:0000462 pseudogenic_region SO:0000462 pseudogenic_region SO:0000516 pseudogenic_transcript SO:0000516 pseudogenic_transcript SO:0000778 pseudogenic_tRNA SO:0000778 pseudogenic_tRNA SO:0000777 pseudogenic_rRNA SO:0000777 pseudogenic_rRNA SO:0000673 transcript SO:0000673 transcript SO:0000336 pseudogene SO:0000336 pseudogene SO:0002087 pseudogenic_CDS SO:0002087 pseudogenic_CDS SO:0000507 pseudogenic_exon SO:0000507 pseudogenic_exon
The local DAG shows nearby parent, child, and related terms. Each node links to its own term page.

Relationships

Parents

Children

http://purl.obolibrary.org/obo/so#non_functional_homolog_of (outgoing)

http://purl.obolibrary.org/obo/so#part_of (outgoing)

http://purl.obolibrary.org/obo/so#part_of (incoming)

Change history

This timeline summarizes changes identified in SO’s GitHub commit history, including updates to labels, definitions, parent terms, synonyms, subsets, and obsoletion status. It is a best-effort reconstruction and may not include every change to a term. Since only history from GitHub is included at the moment, any term added before the migration from SVN to Git will show as being created in 2016. This will be addressed once SVN history is incorporated.

DateChangeSummaryEvidence
2018-01-26synonym addedSynonym added: INSDC_qualifier:pseudo
Scope: exact
5fe48bd
2018-01-26synonym addedSynonym added: INSDC_feature:misc_RNA
Scope: broad
5fe48bd
2016-12-05createdTerm introduced into the editable ontology history
Initial label: pseudogenic_transcript
Initial definition captured.
Initial parent: SO:0000462
92e3cae