Sequence Ontology

A shared vocabulary for biological sequence features and annotations

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viral_sequence

SO:0001041

Definition: The region of nucleotide sequence of a virus, a submicroscopic particle that replicates by infecting a host cell.

Comments and references

The definitions of the children of this term were revised Decemeber 2007 after discussion on song-devel. The resulting definitions are slightly unweildy but hopefully more logically correct.

Definition references: SO:ke

Synonyms

ScopeValue
exactviral sequence
exactvirus sequence

Identifiers and subsets

Accession: SO:0001041

Persistent URL: http://purl.obolibrary.org/obo/SO_0001041

Alternate IDs: None

Subsets: None

Cross references: None

History summary

Term history is reconstructed from the Git-era ontology files by comparing ontology classes across revisions. Earlier SVN-era changes will be added at a future date.

First seen in Git-era editable history: 2016-12-05 in commit 92e3cae

Most recent Git-era change: 2016-12-05 in commit 92e3cae

Number of changes: 1

Ontology neighborhood diagram

Ontology neighborhood for SO:0001041 Ontology neighborhood graph for SO:0001041 viral_sequence. Parent, child, and related nodes can be activated to open their term pages. SO:0001235 replicon SO:0001235 replicon SO:0001038 extrachromosomal_mobile_genetic_element SO:0001038 extrachromosomal_mobile_genetic_element SO:0001041 viral_sequence SO:0001041 viral_sequence SO:0001042 phage_sequence SO:0001042 phage_sequence SO:0001169 ds_RNA_viral_sequence SO:0001169 ds_RNA_viral_sequence SO:0001198 ds_DNA_viral_sequence SO:0001198 ds_DNA_viral_sequence SO:0001199 ss_RNA_viral_sequence SO:0001199 ss_RNA_viral_sequence
The local DAG shows nearby parent, child, and related terms. Each node links to its own term page.

Relationships

Parents

Children

Change history

This timeline summarizes changes identified in SO’s GitHub commit history, including updates to labels, definitions, parent terms, synonyms, subsets, and obsoletion status. It is a best-effort reconstruction and may not include every change to a term. Since only history from GitHub is included at the moment, any term added before the migration from SVN to Git will show as being created in 2016. This will be addressed once SVN history is incorporated.

DateChangeSummaryEvidence
2016-12-05createdTerm introduced into the editable ontology history
Initial label: viral_sequence
Initial definition captured.
Initial parents: SO:0001038, SO:0001235
92e3cae