DRE_motif
SO:0001156
Definition: A sequence element characteristic of some RNA polymerase II promoters, usually located between -10 and -60 relative to the TSS. Consensus sequence is WATCGATW.
Comments and references
This consensus sequence was identified computationally using the MEME algorithm within core promoter sequences from -60 to +40, with an E value of 1.7e-183. Tends to co-occur with Motif 7. Tends to not occur with DPE motif (SO:0000015) or motif 10.
Definition references: PMID:12537576
Synonyms
| Scope | Value |
|---|---|
| exact | DRE motif |
| exact | NDM4 |
| exact | WATCGATW_motif |
Identifiers and subsets
Accession: SO:0001156
Persistent URL: http://purl.obolibrary.org/obo/SO_0001156
Alternate IDs: None
Subsets: None
Cross references: None
History summary
Term history is reconstructed from the Git-era ontology files by comparing ontology classes across revisions. Earlier SVN-era changes will be added at a future date.
First seen in Git-era editable history: 2016-12-05 in commit 92e3cae
Most recent Git-era change: 2021-07-12 in commit 795c410
Number of changes: 2
Ontology neighborhood diagram
Relationships
Parents
Children
None recorded in the current release neighborhood.
http://purl.obolibrary.org/obo/so#part_of (outgoing)
Change history
This timeline summarizes changes identified in SO’s GitHub commit history, including updates to labels, definitions, parent terms, synonyms, subsets, and obsoletion status. It is a best-effort reconstruction and may not include every change to a term. Since only history from GitHub is included at the moment, any term added before the migration from SVN to Git will show as being created in 2016. This will be addressed once SVN history is incorporated.
| Date | Change | Summary | Evidence |
|---|---|---|---|
| 2021-07-12 | edited | Term stanza touched in repository history | 795c410 |
| 2016-12-05 | created | Term introduced into the editable ontology history Initial label: DRE_motif Initial definition captured. Initial parent: SO:0000713 | 92e3cae |