Sequence Ontology

A shared vocabulary for biological sequence features and annotations

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protein_coding_gene

SO:0001217

Definition: A gene that codes for an RNA that can be translated into a protein.

Synonyms

ScopeValue
exactprotein coding gene

Identifiers and subsets

Accession: SO:0001217

Persistent URL: http://purl.obolibrary.org/obo/SO_0001217

Alternate IDs: None

Subsets: Alliance_of_Genome_Resources

Cross references: None

History summary

Term history is reconstructed from the Git-era ontology files by comparing ontology classes across revisions. Earlier SVN-era changes will be added at a future date.

First seen in Git-era editable history: 2016-12-05 in commit 92e3cae

Most recent Git-era change: 2020-03-27 in commit cb6662b

Number of changes: 3

Ontology neighborhood diagram

Ontology neighborhood for SO:0001217 Ontology neighborhood graph for SO:0001217 protein_coding_gene. Parent, child, and related nodes can be activated to open their term pages. SO:0000704 gene SO:0000704 gene SO:0001217 protein_coding_gene SO:0001217 protein_coding_gene SO:0000455 gene_with_mRNA_with_frameshift SO:0000455 gene_with_mRNA_with_frameshift SO:0000693 gene_with_recoded_mRNA SO:0000693 gene_with_recoded_mRNA SO:0000451 gene_with_polyadenylated_mRNA SO:0000451 gene_with_polyadenylated_mRNA SO:0000548 gene_with_edited_transcript SO:0000548 gene_with_edited_transcript SO:0000010 protein_coding SO:0000010 protein_coding
The local DAG shows nearby parent, child, and related terms. Each node links to its own term page.

Relationships

Parents

Children

http://purl.obolibrary.org/obo/so#has_quality (outgoing)

Change history

This timeline summarizes changes identified in SO’s GitHub commit history, including updates to labels, definitions, parent terms, synonyms, subsets, and obsoletion status. It is a best-effort reconstruction and may not include every change to a term. Since only history from GitHub is included at the moment, any term added before the migration from SVN to Git will show as being created in 2016. This will be addressed once SVN history is incorporated.

DateChangeSummaryEvidence
2020-03-27subset addedSubset added: Alliance_of_Genome_Resourcescb6662b
2020-03-27definition changedDefinition updated
Before: no definition recorded
After: A gene that codes for an RNA that can be translated into a protein.
3ec5d33
2016-12-05createdTerm introduced into the editable ontology history
Initial label: protein_coding_gene
Initial parent: SO:0000704
92e3cae