Sequence Ontology

A shared vocabulary for biological sequence features and annotations

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fragment_assembly

SO:0001249

Definition: A fragment assembly is a genome assembly that orders overlapping fragments of the genome based on landmark sequences. The base pair distance between the landmarks is known allowing additivity of lengths.

Comments and references

Definition references: SO:ke

Synonyms

ScopeValue
exactfragment assembly
exactphysical map

Identifiers and subsets

Accession: SO:0001249

Persistent URL: http://purl.obolibrary.org/obo/SO_0001249

Alternate IDs: None

Subsets: None

Cross references: None

History summary

Term history is reconstructed from the Git-era ontology files by comparing ontology classes across revisions. Earlier SVN-era changes will be added at a future date.

First seen in Git-era editable history: 2016-12-05 in commit 92e3cae

Most recent Git-era change: 2016-12-05 in commit 92e3cae

Number of changes: 1

Ontology neighborhood diagram

Ontology neighborhood for SO:0001249 Ontology neighborhood graph for SO:0001249 fragment_assembly. Parent, child, and related nodes can be activated to open their term pages. SO:0001248 assembly SO:0001248 assembly SO:0001249 fragment_assembly SO:0001249 fragment_assembly SO:0001250 fingerprint_map SO:0001250 fingerprint_map SO:0001251 STS_map SO:0001251 STS_map SO:0001252 RH_map SO:0001252 RH_map
The local DAG shows nearby parent, child, and related terms. Each node links to its own term page.

Relationships

Parents

Children

Change history

This timeline summarizes changes identified in SO’s GitHub commit history, including updates to labels, definitions, parent terms, synonyms, subsets, and obsoletion status. It is a best-effort reconstruction and may not include every change to a term. Since only history from GitHub is included at the moment, any term added before the migration from SVN to Git will show as being created in 2016. This will be addressed once SVN history is incorporated.

DateChangeSummaryEvidence
2016-12-05createdTerm introduced into the editable ontology history
Initial label: fragment_assembly
Initial definition captured.
Initial parent: SO:0001248
92e3cae