Sequence Ontology

A shared vocabulary for biological sequence features and annotations

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whole_genome_sequence_status

SO:0001499

Definition: The status of whole genome sequence.

Comments and references

This terms and children were added to SO in response to tracker request by Patrick Chain. The paper Genome Project Standards in a New Era of Sequencing. Science October 9th 2009, addresses these terms.

Definition references: DOI:10.1126

Synonyms

ScopeValue
exactwhole genome sequence status

Identifiers and subsets

Accession: SO:0001499

Persistent URL: http://purl.obolibrary.org/obo/SO_0001499

Alternate IDs: None

Subsets: None

Cross references: None

History summary

Term history is reconstructed from the Git-era ontology files by comparing ontology classes across revisions. Earlier SVN-era changes will be added at a future date.

First seen in Git-era editable history: 2016-12-05 in commit 92e3cae

Most recent Git-era change: 2016-12-05 in commit 92e3cae

Number of changes: 1

Ontology neighborhood diagram

Ontology neighborhood for SO:0001499 Ontology neighborhood graph for SO:0001499 whole_genome_sequence_status. Parent, child, and related nodes can be activated to open their term pages. SO:0000905 status SO:0000905 status SO:0001499 whole_genome_sequence_status SO:0001499 whole_genome_sequence_status SO:0001486 standard_draft SO:0001486 standard_draft SO:0001487 high_quality_draft SO:0001487 high_quality_draft SO:0001488 improved_high_quality_draft SO:0001488 improved_high_quality_draft SO:0001489 annotation_directed_improved_draft SO:0001489 annotation_directed_improved_draft SO:0001491 finished_genome SO:0001491 finished_genome SO:0001490 noncontiguous_finished SO:0001490 noncontiguous_finished
The local DAG shows nearby parent, child, and related terms. Each node links to its own term page.

Relationships

Parents

Children

Change history

This timeline summarizes changes identified in SO’s GitHub commit history, including updates to labels, definitions, parent terms, synonyms, subsets, and obsoletion status. It is a best-effort reconstruction and may not include every change to a term. Since only history from GitHub is included at the moment, any term added before the migration from SVN to Git will show as being created in 2016. This will be addressed once SVN history is incorporated.

DateChangeSummaryEvidence
2016-12-05createdTerm introduced into the editable ontology history
Initial label: whole_genome_sequence_status
Initial definition captured.
Initial parent: SO:0000905
92e3cae