Sequence Ontology

A shared vocabulary for biological sequence features and annotations

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unitary_pseudogene

SO:0001759

Definition: A pseudogene, deactivated from original state by mutation, fixed in a population,where the ortholog in a reference species such as mouse remains functional.

Comments and references

This is different from a non processed pseudogene because the gene was not duplicated. An example is the L-gulono-lactone oxidase pseudogene in primates.

Definition references: GENCODE:http://www.gencodegenes.org/gencode_biotypes.html, SO:ke, http://en.wikipedia.org/wiki/Pseudogene

Synonyms

ScopeValue
exactINSDC_qualifier:unitary
relateddisabled gene
relatedunitary pseudogene
broadINSDC_feature:gene

Identifiers and subsets

Accession: SO:0001759

Persistent URL: http://purl.obolibrary.org/obo/SO_0001759

Alternate IDs: None

Subsets: None

Cross references: None

History summary

Term history is reconstructed from the Git-era ontology files by comparing ontology classes across revisions. Earlier SVN-era changes will be added at a future date.

First seen in Git-era editable history: 2016-12-05 in commit 92e3cae

Most recent Git-era change: 2018-01-26 in commit 5fe48bd

Number of changes: 3

Ontology neighborhood diagram

Ontology neighborhood for SO:0001759 Ontology neighborhood graph for SO:0001759 unitary_pseudogene. Parent, child, and related nodes can be activated to open their term pages. SO:0001760 non_processed_pseudogene SO:0001760 non_processed_pseudogene SO:0001759 unitary_pseudogene SO:0001759 unitary_pseudogene SO:0002189 allelic_pseudogene SO:0002189 allelic_pseudogene SO:0002108 transcribed_unitary_pseudogene SO:0002108 transcribed_unitary_pseudogene
The local DAG shows nearby parent, child, and related terms. Each node links to its own term page.

Relationships

Parents

Children

Change history

This timeline summarizes changes identified in SO’s GitHub commit history, including updates to labels, definitions, parent terms, synonyms, subsets, and obsoletion status. It is a best-effort reconstruction and may not include every change to a term. Since only history from GitHub is included at the moment, any term added before the migration from SVN to Git will show as being created in 2016. This will be addressed once SVN history is incorporated.

DateChangeSummaryEvidence
2018-01-26synonym addedSynonym added: INSDC_qualifier:unitary
Scope: exact
5fe48bd
2018-01-26synonym addedSynonym added: INSDC_feature:gene
Scope: broad
5fe48bd
2016-12-05createdTerm introduced into the editable ontology history
Initial label: unitary_pseudogene
Initial definition captured.
Initial parent: SO:0001760
92e3cae