Sequence Ontology

A shared vocabulary for biological sequence features and annotations

Home / Current release / SO:0001762

variant_origin

SO:0001762

Definition: A quality inhering in a variant by virtue of its origin.

Comments and references

Definition references: PMID:17597783, SO:ke

Synonyms

ScopeValue
exactvariant origin

Identifiers and subsets

Accession: SO:0001762

Persistent URL: http://purl.obolibrary.org/obo/SO_0001762

Alternate IDs: None

Subsets: None

Cross references: None

History summary

Term history is reconstructed from the Git-era ontology files by comparing ontology classes across revisions. Earlier SVN-era changes will be added at a future date.

First seen in Git-era editable history: 2016-12-05 in commit 92e3cae

Most recent Git-era change: 2016-12-05 in commit 92e3cae

Number of changes: 1

Ontology neighborhood diagram

Ontology neighborhood for SO:0001762 Ontology neighborhood graph for SO:0001762 variant_origin. Parent, child, and related nodes can be activated to open their term pages. SO:0001761 variant_quality SO:0001761 variant_quality SO:0001762 variant_origin SO:0001762 variant_origin SO:0001776 paternal_variant SO:0001776 paternal_variant SO:0001777 somatic_variant SO:0001777 somatic_variant SO:0001775 maternal_variant SO:0001775 maternal_variant SO:0001778 germline_variant SO:0001778 germline_variant SO:0001779 pedigree_specific_variant SO:0001779 pedigree_specific_variant SO:0001780 population_specific_variant SO:0001780 population_specific_variant
The local DAG shows nearby parent, child, and related terms. Each node links to its own term page.

Relationships

Parents

Children

Change history

This timeline summarizes changes identified in SO’s GitHub commit history, including updates to labels, definitions, parent terms, synonyms, subsets, and obsoletion status. It is a best-effort reconstruction and may not include every change to a term. Since only history from GitHub is included at the moment, any term added before the migration from SVN to Git will show as being created in 2016. This will be addressed once SVN history is incorporated.

DateChangeSummaryEvidence
2016-12-05createdTerm introduced into the editable ontology history
Initial label: variant_origin
Initial definition captured.
Initial parent: SO:0001761
92e3cae