Sequence Ontology

A shared vocabulary for biological sequence features and annotations

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variant_frequency

SO:0001763

Definition: A physical quality which inheres to the variant by virtue of the number instances of the variant within a population.

Comments and references

Definition references: PMID:17597783, SO:ke

Synonyms

ScopeValue
exactvariant frequency

Identifiers and subsets

Accession: SO:0001763

Persistent URL: http://purl.obolibrary.org/obo/SO_0001763

Alternate IDs: None

Subsets: None

Cross references: None

History summary

Term history is reconstructed from the Git-era ontology files by comparing ontology classes across revisions. Earlier SVN-era changes will be added at a future date.

First seen in Git-era editable history: 2016-12-05 in commit 92e3cae

Most recent Git-era change: 2016-12-05 in commit 92e3cae

Number of changes: 1

Ontology neighborhood diagram

Ontology neighborhood for SO:0001763 Ontology neighborhood graph for SO:0001763 variant_frequency. Parent, child, and related nodes can be activated to open their term pages. SO:0001761 variant_quality SO:0001761 variant_quality SO:0001763 variant_frequency SO:0001763 variant_frequency SO:0001764 unique_variant SO:0001764 unique_variant SO:0002119 allelic_frequency SO:0002119 allelic_frequency SO:0001767 common_variant SO:0001767 common_variant SO:0001768 fixed_variant SO:0001768 fixed_variant SO:0001765 rare_variant SO:0001765 rare_variant SO:0001766 polymorphic_variant SO:0001766 polymorphic_variant
The local DAG shows nearby parent, child, and related terms. Each node links to its own term page.

Relationships

Parents

Children

Change history

This timeline summarizes changes identified in SO’s GitHub commit history, including updates to labels, definitions, parent terms, synonyms, subsets, and obsoletion status. It is a best-effort reconstruction and may not include every change to a term. Since only history from GitHub is included at the moment, any term added before the migration from SVN to Git will show as being created in 2016. This will be addressed once SVN history is incorporated.

DateChangeSummaryEvidence
2016-12-05createdTerm introduced into the editable ontology history
Initial label: variant_frequency
Initial definition captured.
Initial parent: SO:0001761
92e3cae