SO:0001782 - TF_binding_site

TF_binding_site_variant

SO:0001782

Definition: A sequence variant located within a transcription factor binding site.

Comments and references

Definition references: EBI:fc

Synonyms

Scope	Value
exact	Jannovar:tf_binding_site_variant
exact	TF binding site variant
exact	VEP:TF_binding_site_variant

Identifiers and subsets

Accession: SO:0001782

Persistent URL: http://purl.obolibrary.org/obo/SO_0001782

Alternate IDs: None

Subsets: None

Cross references: http:www.ensembl.org/info/genome/variation/predicted_data.html#consequences

History summary

Term history is reconstructed from the Git-era ontology files by comparing ontology classes across revisions. Earlier SVN-era changes will be added at a future date.

First seen in Git-era editable history: 2016-12-05 in commit 92e3cae

Most recent Git-era change: 2016-12-05 in commit 92e3cae

Number of changes: 1

Ontology neighborhood diagram

The local DAG shows nearby parent, child, and related terms. Each node links to its own term page.

Relationships

Parents

SO:0001566 - regulatory_region_variant

Children

None recorded in the current release neighborhood.

Change history

This timeline summarizes changes identified in SO’s GitHub commit history, including updates to labels, definitions, parent terms, synonyms, subsets, and obsoletion status. It is a best-effort reconstruction and may not include every change to a term. Since only history from GitHub is included at the moment, any term added before the migration from SVN to Git will show as being created in 2016. This will be addressed once SVN history is incorporated.

Date	Change	Summary	Evidence
2016-12-05	created	Term introduced into the editable ontology history Initial label: TF_binding_site_variant Initial definition captured. Initial parent: SO:0001566	`92e3cae`