SO:0001917 - CAGE

CAGE_cluster

SO:0001917

Definition: A kind of transcription_initiation_cluster defined by the clustering of CAGE tags on a sequence region.

Comments and references

Definition references: PMID:16645617, SO:andrewgibson

Synonyms

Scope	Value
exact	CAGE cluster
exact	CAGE peak
exact	CAGE_peak
exact	INSDC_note:CAGE_cluster
broad	INSDC_feature:misc_feature

Identifiers and subsets

Accession: SO:0001917

Persistent URL: http://purl.obolibrary.org/obo/SO_0001917

Alternate IDs: None

Subsets: None

Cross references: None

History summary

Term history is reconstructed from the Git-era ontology files by comparing ontology classes across revisions. Earlier SVN-era changes will be added at a future date.

First seen in Git-era editable history: 2016-12-05 in commit 92e3cae

Most recent Git-era change: 2018-01-26 in commit 5fe48bd

Number of changes: 3

Ontology neighborhood diagram

The local DAG shows nearby parent, child, and related terms. Each node links to its own term page.

Relationships

Parents

SO:0001915 - transcription_start_cluster

Children

None recorded in the current release neighborhood.

Change history

This timeline summarizes changes identified in SO’s GitHub commit history, including updates to labels, definitions, parent terms, synonyms, subsets, and obsoletion status. It is a best-effort reconstruction and may not include every change to a term. Since only history from GitHub is included at the moment, any term added before the migration from SVN to Git will show as being created in 2016. This will be addressed once SVN history is incorporated.

Date	Change	Summary	Evidence
2018-01-26	synonym added	Synonym added: INSDC_note:CAGE_cluster Scope: exact	`5fe48bd`
2018-01-26	synonym added	Synonym added: INSDC_feature:misc_feature Scope: broad	`5fe48bd`
2016-12-05	created	Term introduced into the editable ontology history Initial label: CAGE_cluster Initial definition captured. Initial parent: SO:0001915	`92e3cae`