Sequence Ontology

A shared vocabulary for biological sequence features and annotations

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IG_J_pseudogene

SO:0002101

Definition: A pseudogenic joining region which closely resembles a known functional imunoglobulin joining gene but in which the coding region has stop codons, frameshift mutations or a mutation that effects the initiation codon that rearranges at the DNA level and codes the joining region of the variable domain of an immunoglobulin chain.

Comments and references

These terms have been requested by Adam Frankish to support Gencode and Vega biotypes. The terms are defined according to IGMT.

Definition references: GENCODE:http://www.gencodegenes.org/gencode_biotypes.html, IGMT:http://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php

Synonyms

ScopeValue
exactIG J pseudogene
exactIG joining pseudogene
exactIG_joining_pseudogene
exactImmunoglobulin Joining Pseudogene
exactImmunoglobulin_Joining_Pseudogene

Identifiers and subsets

Accession: SO:0002101

Persistent URL: http://purl.obolibrary.org/obo/SO_0002101

Alternate IDs: None

Subsets: None

Cross references: None

History summary

Term history is reconstructed from the Git-era ontology files by comparing ontology classes across revisions. Earlier SVN-era changes will be added at a future date.

First seen in Git-era editable history: 2016-12-05 in commit 92e3cae

Most recent Git-era change: 2016-12-05 in commit 92e3cae

Number of changes: 1

Ontology neighborhood diagram

Ontology neighborhood for SO:0002101 Ontology neighborhood graph for SO:0002101 IG_J_pseudogene. Parent, child, and related nodes can be activated to open their term pages. SO:0002098 immunoglobulin_pseudogene SO:0002098 immunoglobulin_pseudogene SO:0002101 IG_J_pseudogene SO:0002101 IG_J_pseudogene
The local DAG shows nearby parent, child, and related terms. Each node links to its own term page.

Relationships

Parents

Children

None recorded in the current release neighborhood.

Change history

This timeline summarizes changes identified in SO’s GitHub commit history, including updates to labels, definitions, parent terms, synonyms, subsets, and obsoletion status. It is a best-effort reconstruction and may not include every change to a term. Since only history from GitHub is included at the moment, any term added before the migration from SVN to Git will show as being created in 2016. This will be addressed once SVN history is incorporated.

DateChangeSummaryEvidence
2016-12-05createdTerm introduced into the editable ontology history
Initial label: IG_J_pseudogene
Initial definition captured.
Initial parent: SO:0002098
92e3cae