IG_V_pseudogene
SO:0002102
Definition: A pseudogenic variable region which closely resembles a known functional imunoglobulin variable gene but in which the coding region has stop codons, frameshift mutations or a mutation that effects the initiation codon that rearranges at the DNA level and codes the variable region of an immunoglobulin chain.
Comments and references
These terms have been requested by Adam Frankish to support Gencode and Vega biotypes. The terms are defined according to IGMT.
Definition references: GENCODE:http://www.gencodegenes.org/gencode_biotypes.html, IGMT:http://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php
Synonyms
| Scope | Value |
|---|---|
| exact | IG V pseudogene |
| exact | IG variable pseudogene |
| exact | IG_variable_pseudogene |
| exact | Immunoglobulin variable pseudogene |
| exact | Immunoglobulin_variable_pseudogene |
Identifiers and subsets
Accession: SO:0002102
Persistent URL: http://purl.obolibrary.org/obo/SO_0002102
Alternate IDs: None
Subsets: None
Cross references: None
History summary
Term history is reconstructed from the Git-era ontology files by comparing ontology classes across revisions. Earlier SVN-era changes will be added at a future date.
First seen in Git-era editable history: 2016-12-05 in commit 92e3cae
Most recent Git-era change: 2021-07-12 in commit 795c410
Number of changes: 2
Ontology neighborhood diagram
Relationships
Parents
Children
None recorded in the current release neighborhood.
Change history
This timeline summarizes changes identified in SO’s GitHub commit history, including updates to labels, definitions, parent terms, synonyms, subsets, and obsoletion status. It is a best-effort reconstruction and may not include every change to a term. Since only history from GitHub is included at the moment, any term added before the migration from SVN to Git will show as being created in 2016. This will be addressed once SVN history is incorporated.
| Date | Change | Summary | Evidence |
|---|---|---|---|
| 2021-07-12 | definition changed | Definition updated Before: A pseudogenic variable region which closely resembles a known functional imunoglobulin variable gene but in which the coding region has stop codons, frameshift mutations or a mutation that effects the initiation codon that rearranges at the DNA level and codes the variable region of an immunoglobulin chain. After: A pseudogenic variable region which closely resembles a known functional imunoglobulin variable gene but in which the coding region has stop codons, frameshift mutations or a mutation that effects the initiation codon that rearranges at the DNA level and codes the variable region of an immunoglobulin chain. | 795c410 |
| 2016-12-05 | created | Term introduced into the editable ontology history Initial label: IG_V_pseudogene Initial definition captured. Initial parent: SO:0002098 | 92e3cae |