Sequence Ontology

A shared vocabulary for biological sequence features and annotations

Home / Current release / SO:0002229

CDS_three_prime_extension

SO:0002229

Definition: A sequence variant extending the CDS at the 3' end, that causes elongation of the resulting polypeptide sequence at the C terminus.

Comments and references

Added as per request by Edward Wallace GitHub issue #480 (https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/480)

Definition references: PMID:14732127, PMID:15864293, PMID:27984720, PMID:31216041, PMID:32020195

Synonyms

ScopeValue
exactCDS Extension 3 prime
exactCDS Extension three prime
exactelongated CDS three prime
exactelongated_CDS_three_prime

Identifiers and subsets

Accession: SO:0002229

Persistent URL: http://purl.obolibrary.org/obo/SO_0002229

Alternate IDs: None

Subsets: None

Cross references: None

History summary

Term history is reconstructed from the Git-era ontology files by comparing ontology classes across revisions. Earlier SVN-era changes will be added at a future date.

First seen in Git-era editable history: 2020-03-27 in commit 50e7b32

Most recent Git-era change: 2020-03-27 in commit 4e3145c

Number of changes: 2

Ontology neighborhood diagram

Ontology neighborhood for SO:0002229 Ontology neighborhood graph for SO:0002229 CDS_three_prime_extension. Parent, child, and related nodes can be activated to open their term pages. SO:0002227 CDS_extension SO:0002227 CDS_extension SO:0002229 CDS_three_prime_extension SO:0002229 CDS_three_prime_extension SO:0001610 elongated_polypeptide_C_terminal SO:0001610 elongated_polypeptide_C_terminal
The local DAG shows nearby parent, child, and related terms. Each node links to its own term page.

Relationships

Parents

Children

None recorded in the current release neighborhood.

http://purl.obolibrary.org/obo/so#derives_from (incoming)

Change history

This timeline summarizes changes identified in SO’s GitHub commit history, including updates to labels, definitions, parent terms, synonyms, subsets, and obsoletion status. It is a best-effort reconstruction and may not include every change to a term. Since only history from GitHub is included at the moment, any term added before the migration from SVN to Git will show as being created in 2016. This will be addressed once SVN history is incorporated.

DateChangeSummaryEvidence
2020-03-27editedTerm stanza touched in repository history4e3145c
#479
2020-03-27createdTerm introduced into the editable ontology history
Initial label: CDS_three_prime_extension
Initial definition captured.
Initial parent: SO:0002227
50e7b32
#480