Sequence Ontology

A shared vocabulary for biological sequence features and annotations

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gene_cassette_array

SO:0005854

Definition: An array of non-functional genes whose members, when captured by recombination form functional genes.

Comments and references

This would include, for example, the arrays of non-functional VSG genes of Trypanosomes.

Definition references: SO:ma

Synonyms

ScopeValue
exactgene cassette array

Identifiers and subsets

Accession: SO:0005854

Persistent URL: http://purl.obolibrary.org/obo/SO_0005854

Alternate IDs: None

Subsets: None

Cross references: None

History summary

Term history is reconstructed from the Git-era ontology files by comparing ontology classes across revisions. Earlier SVN-era changes will be added at a future date.

First seen in Git-era editable history: 2016-12-05 in commit 92e3cae

Most recent Git-era change: 2016-12-05 in commit 92e3cae

Number of changes: 1

Ontology neighborhood diagram

Ontology neighborhood for SO:0005854 Ontology neighborhood graph for SO:0005854 gene_cassette_array. Parent, child, and related nodes can be activated to open their term pages. SO:0005855 gene_group SO:0005855 gene_group SO:0005854 gene_cassette_array SO:0005854 gene_cassette_array SO:0001984 silent_mating_type_cassette_array SO:0001984 silent_mating_type_cassette_array SO:0005853 gene_cassette SO:0005853 gene_cassette
The local DAG shows nearby parent, child, and related terms. Each node links to its own term page.

Relationships

Parents

Children

http://purl.obolibrary.org/obo/so#has_part (outgoing)

Change history

This timeline summarizes changes identified in SO’s GitHub commit history, including updates to labels, definitions, parent terms, synonyms, subsets, and obsoletion status. It is a best-effort reconstruction and may not include every change to a term. Since only history from GitHub is included at the moment, any term added before the migration from SVN to Git will show as being created in 2016. This will be addressed once SVN history is incorporated.

DateChangeSummaryEvidence
2016-12-05createdTerm introduced into the editable ontology history
Initial label: gene_cassette_array
Initial definition captured.
Initial parent: SO:0005855
92e3cae