Sequence Ontology

A shared vocabulary for biological sequence features and annotations

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deletion

SO:0000159

Definition: The point at which one or more contiguous nucleotides were excised.

Comments and references

Definition references: SO:ke

Synonyms

ScopeValue
exactdeleted_sequence
exactnucleotide deletion
exactnucleotide_deletion

Identifiers and subsets

Accession: SO:0000159

Persistent URL: http://purl.obolibrary.org/obo/SO_0000159

Alternate IDs: SO:1000033

Subsets: SOFA

Cross references: http://en.wikipedia.org/wiki/Nucleotide_deletion, loinc:LA6692-3

History summary

Term history is reconstructed from the Git-era ontology files by comparing ontology classes across revisions. Earlier SVN-era changes will be added at a future date.

First seen in Git-era editable history: 2016-12-05 in commit 92e3cae

Most recent Git-era change: 2016-12-05 in commit 92e3cae

Number of changes: 1

Ontology neighborhood diagram

Ontology neighborhood for SO:0000159 Ontology neighborhood graph for SO:0000159 deletion. Parent, child, and related nodes can be activated to open their term pages. SO:0001059 sequence_alteration SO:0001059 sequence_alteration SO:0001411 biological_region SO:0001411 biological_region SO:0000159 deletion SO:0000159 deletion SO:0002066 mobile_element_deletion SO:0002066 mobile_element_deletion SO:1000171 deficient_inversion SO:1000171 deficient_inversion SO:1000029 chromosomal_deletion SO:1000029 chromosomal_deletion SO:0000062 deficient_intrachromosomal_transposition SO:0000062 deficient_intrachromosomal_transposition SO:1000147 deficient_translocation SO:1000147 deficient_translocation
The local DAG shows nearby parent, child, and related terms. Each node links to its own term page.

Relationships

Parents

Children

http://purl.obolibrary.org/obo/so#has_part (incoming)

Change history

This timeline summarizes changes identified in SO’s GitHub commit history, including updates to labels, definitions, parent terms, synonyms, subsets, and obsoletion status. It is a best-effort reconstruction and may not include every change to a term. Since only history from GitHub is included at the moment, any term added before the migration from SVN to Git will show as being created in 2016. This will be addressed once SVN history is incorporated.

DateChangeSummaryEvidence
2016-12-05createdTerm introduced into the editable ontology history
Initial label: deletion
Initial definition captured.
Initial parents: SO:0001059, SO:0001411
92e3cae