transcriptional_cis_regulatory_region
SO:0001055
Definition: A regulatory_region that modulates the transcription of a gene or genes.
Comments and references
Previous parent term transcription_regulatory_region (SO:0001067) has been merged with this term on 11 Feb 2021 as part of the GREEKC consortium. See GitHub Issue #527.
Definition references: PMID:9679020, SO:regcreative
Synonyms
| Scope | Value |
|---|---|
| exact | INSDC_qualifier:transcriptional_cis_regulatory_region |
| exact | transcription-control region |
| exact | transcriptional cis regulatory region |
| broad | INSDC_feature:regulatory |
Identifiers and subsets
Accession: SO:0001055
Persistent URL: http://purl.obolibrary.org/obo/SO_0001055
Alternate IDs: None
Subsets: SOFA
Cross references: None
History summary
Term history is reconstructed from the Git-era ontology files by comparing ontology classes across revisions. Earlier SVN-era changes will be added at a future date.
First seen in Git-era editable history: 2016-12-05 in commit 92e3cae
Most recent Git-era change: 2021-02-11 in commit f8583bf
Number of changes: 5
Ontology neighborhood diagram
Relationships
Parents
Children
- SO:0000057 - operator
- SO:0002382 - range_extender_element
- SO:0000727 - cis_regulatory_module
- SO:0000235 - TF_binding_site
- SO:0002047 - transcription_pause_site
- SO:0000551 - polyA_signal_sequence
- SO:0002205 - response_element
- SO:0000167 - promoter
- SO:0000141 - terminator
- SO:0002297 - TFRS_collection
- SO:0002296 - TFRS_module
- SO:0001952 - promoter_flanking_region
- SO:0001056 - splicing_regulatory_region
- SO:0001492 - intronic_regulatory_region
- SO:0001427 - cis_regulatory_frameshift_element
- SO:0001058 - promoter_targeting_sequence
Change history
This timeline summarizes changes identified in SO’s GitHub commit history, including updates to labels, definitions, parent terms, synonyms, subsets, and obsoletion status. It is a best-effort reconstruction and may not include every change to a term. Since only history from GitHub is included at the moment, any term added before the migration from SVN to Git will show as being created in 2016. This will be addressed once SVN history is incorporated.
| Date | Change | Summary | Evidence |
|---|---|---|---|
| 2021-02-11 | parent removed | Parent removed: SO:0001679 | f8583bf#527 |
| 2021-02-11 | parent added | Parent added: SO:0005836 | f8583bf#527 |
| 2018-01-26 | synonym added | Synonym added: INSDC_qualifier:transcriptional_cis_regulatory_region Scope: exact | 5fe48bd |
| 2018-01-26 | synonym added | Synonym added: INSDC_feature:regulatory Scope: broad | 5fe48bd |
| 2016-12-05 | created | Term introduced into the editable ontology history Initial label: transcriptional_cis_regulatory_region Initial definition captured. Initial parent: SO:0001679 | 92e3cae |