SO:0002297 - TFRS

TFRS_collection

SO:0002297

Definition: The possible discontinous stretch of DNA that encompass all the TFRSs that regulate a promoter.

Comments and references

Added as per Mejia-Almonte et.al PMID:32665585. Moved from transcription_regulatory_region (SO:0001679) to transcriptional_cis_regulatory_region (SO:0001055) by Dave Sant on Feb 11, 2021 when transcription_regulatory_region was merged into transcriptional_cis_regulatory_region to be consistent with GO and reduce redundancy as part of the GREEKC consortium. See GitHub Issue #527.

Definition references: Bacterial_regulation_working_group:CMA, PMID:32665585

Synonyms

Scope	Value
exact	TFRS collection
exact	transcription factor regulatory site collection

Identifiers and subsets

Accession: SO:0002297

Persistent URL: http://purl.obolibrary.org/obo/SO_0002297

Alternate IDs: None

Subsets: None

Cross references: None

History summary

Term history is reconstructed from the Git-era ontology files by comparing ontology classes across revisions. Earlier SVN-era changes will be added at a future date.

First seen in Git-era editable history: 2020-08-05 in commit 7d802c8

Most recent Git-era change: 2021-02-16 in commit 1ee2370

Number of changes: 4

Ontology neighborhood diagram

The local DAG shows nearby parent, child, and related terms. Each node links to its own term page.

Relationships

Parents

SO:0001055 - transcriptional_cis_regulatory_region

Children

None recorded in the current release neighborhood.

http://purl.obolibrary.org/obo/so#has_part (outgoing)

SO:0002295 - transcription_factor_regulatory_site

Change history

This timeline summarizes changes identified in SO’s GitHub commit history, including updates to labels, definitions, parent terms, synonyms, subsets, and obsoletion status. It is a best-effort reconstruction and may not include every change to a term. Since only history from GitHub is included at the moment, any term added before the migration from SVN to Git will show as being created in 2016. This will be addressed once SVN history is incorporated.

Date	Change	Summary	Evidence
2021-02-16	edited	Term stanza touched in repository history	`1ee2370` #531
2021-02-11	parent removed	Parent removed: SO:0001679	`f8583bf` #527
2021-02-11	parent added	Parent added: SO:0001055	`f8583bf` #527
2020-08-05	created	Term introduced into the editable ontology history Initial label: TFRS_collection Initial definition captured. Initial parent: SO:0001679	`7d802c8`