SO:0001161 - DMv2

DMv2_motif

SO:0001161

Definition: A sequence element characteristic of some RNA polymerase II promoters, usually located between -60 and -45 relative to the TSS. Consensus sequence is MKSYGGCARCGSYSS. Tends to co-occur with DMv3 (SO:0001160). Tends to not occur with DPE motif (SO:0000015) or MTE (SO:0001162).

Comments and references

Definition references: PMID:12537576:16827941

Synonyms

Scope	Value
exact	DMv2
exact	DMv2 motif
exact	directional motif v2
exact	promoter motif 8
narrow	MKSYGGCARCGSYSS

Identifiers and subsets

Accession: SO:0001161

Persistent URL: http://purl.obolibrary.org/obo/SO_0001161

Alternate IDs: None

Subsets: None

Cross references: None

History summary

Term history is reconstructed from the Git-era ontology files by comparing ontology classes across revisions. Earlier SVN-era changes will be added at a future date.

First seen in Git-era editable history: 2016-12-05 in commit 92e3cae

Most recent Git-era change: 2016-12-05 in commit 92e3cae

Number of changes: 1

Ontology neighborhood diagram

The local DAG shows nearby parent, child, and related terms. Each node links to its own term page.

Relationships

Parents

SO:0001659 - promoter_element

Children

None recorded in the current release neighborhood.

http://purl.obolibrary.org/obo/so#part_of (outgoing)

SO:0000170 - RNApol_II_promoter

Change history

This timeline summarizes changes identified in SO’s GitHub commit history, including updates to labels, definitions, parent terms, synonyms, subsets, and obsoletion status. It is a best-effort reconstruction and may not include every change to a term. Since only history from GitHub is included at the moment, any term added before the migration from SVN to Git will show as being created in 2016. This will be addressed once SVN history is incorporated.

Date	Change	Summary	Evidence
2016-12-05	created	Term introduced into the editable ontology history Initial label: DMv2_motif Initial definition captured. Initial parent: SO:0001659	`92e3cae`