Sequence Ontology

A shared vocabulary for biological sequence features and annotations

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BREd_motif

SO:0001663

Definition: A core RNA polymerase II promoter element with consensus (G/A)T(T/G/A)(T/A)(G/T)(T/G)(T/G).

Comments and references

Definition references: PMID:16858867

Synonyms

ScopeValue
exactBREd
relatedBREd motif

Identifiers and subsets

Accession: SO:0001663

Persistent URL: http://purl.obolibrary.org/obo/SO_0001663

Alternate IDs: None

Subsets: None

Cross references: None

History summary

Term history is reconstructed from the Git-era ontology files by comparing ontology classes across revisions. Earlier SVN-era changes will be added at a future date.

First seen in Git-era editable history: 2016-12-05 in commit 92e3cae

Most recent Git-era change: 2020-11-10 in commit c421726

Number of changes: 3

Ontology neighborhood diagram

Ontology neighborhood for SO:0001663 Ontology neighborhood graph for SO:0001663 BREd_motif. Parent, child, and related nodes can be activated to open their term pages. SO:0001660 core_eukaryotic_promoter_element SO:0001660 core_eukaryotic_promoter_element SO:0001663 BREd_motif SO:0001663 BREd_motif SO:0001669 RNApol_II_core_promoter SO:0001669 RNApol_II_core_promoter
The local DAG shows nearby parent, child, and related terms. Each node links to its own term page.

Relationships

Parents

Children

None recorded in the current release neighborhood.

http://purl.obolibrary.org/obo/so#part_of (outgoing)

Change history

This timeline summarizes changes identified in SO’s GitHub commit history, including updates to labels, definitions, parent terms, synonyms, subsets, and obsoletion status. It is a best-effort reconstruction and may not include every change to a term. Since only history from GitHub is included at the moment, any term added before the migration from SVN to Git will show as being created in 2016. This will be addressed once SVN history is incorporated.

DateChangeSummaryEvidence
2020-11-10definition changedDefinition updated
Before: A core TRNA polymerase II promoter element with consensus (G/A)T(T/G/A)(T/A)(G/T)(T/G)(T/G).
After: A core RNA polymerase II promoter element with consensus (G/A)T(T/G/A)(T/A)(G/T)(T/G)(T/G).
c421726
2019-07-31editedTerm stanza touched in repository historyad4ec85
2016-12-05createdTerm introduced into the editable ontology history
Initial label: BREd_motif
Initial definition captured.
Initial parent: SO:0001660
92e3cae