polymorphic_pseudogene
SO:0001841
Definition: A pseudogene in the reference genome, though known to be intact in the genomes of other individuals of the same species. The annotation process has confirmed that the pseudogenisation event is not a genomic sequencing error.
Comments and references
This terms is used by Ensembl and Vega. Pseudogene owing to a SNP/DIP but in other individuals/haplotypes/strains the gene is translated.
Definition references: GENCODE:http://www.gencodegenes.org/gencode_biotypes.html, JAX:hd
Synonyms
| Scope | Value |
|---|---|
| exact | polymorphic psuedogene |
Identifiers and subsets
Accession: SO:0001841
Persistent URL: http://purl.obolibrary.org/obo/SO_0001841
Alternate IDs: None
Subsets: None
Cross references: None
History summary
Term history is reconstructed from the Git-era ontology files by comparing ontology classes across revisions. Earlier SVN-era changes will be added at a future date.
First seen in Git-era editable history: 2016-12-05 in commit 92e3cae
Most recent Git-era change: 2016-12-05 in commit 92e3cae
Number of changes: 1
Ontology neighborhood diagram
Relationships
Change history
This timeline summarizes changes identified in SO’s GitHub commit history, including updates to labels, definitions, parent terms, synonyms, subsets, and obsoletion status. It is a best-effort reconstruction and may not include every change to a term. Since only history from GitHub is included at the moment, any term added before the migration from SVN to Git will show as being created in 2016. This will be addressed once SVN history is incorporated.
| Date | Change | Summary | Evidence |
|---|---|---|---|
| 2016-12-05 | created | Term introduced into the editable ontology history Initial label: polymorphic_pseudogene Initial definition captured. Initial parent: SO:0000336 | 92e3cae |