SO:0002110 - polymorphic_pseudogene_with_retained

polymorphic_pseudogene_with_retained_intron

SO:0002110

Definition: A polymorphic pseudogene in the reference genome, containing a retained intron, known to be intact in the genomes of other individuals of the same species. The annotation process has confirmed that the pseudogenisation event is not a genomic sequencing error.

Comments and references

Term added as part of collaboration with Gencode, adding biotypes used in annotation.

Definition references: GENCODE:http://www.gencodegenes.org/gencode_biotypes.html

Synonyms

Scope	Value
exact	polymorphic pseudogene with retained intron

Identifiers and subsets

Accession: SO:0002110

Persistent URL: http://purl.obolibrary.org/obo/SO_0002110

Alternate IDs: None

Subsets: None

Cross references: None

History summary

Term history is reconstructed from the Git-era ontology files by comparing ontology classes across revisions. Earlier SVN-era changes will be added at a future date.

First seen in Git-era editable history: 2016-12-05 in commit 92e3cae

Most recent Git-era change: 2021-07-12 in commit 795c410

Number of changes: 2

Ontology neighborhood diagram

The local DAG shows nearby parent, child, and related terms. Each node links to its own term page.

Relationships

Parents

SO:0001841 - polymorphic_pseudogene

Children

None recorded in the current release neighborhood.

Change history

This timeline summarizes changes identified in SO’s GitHub commit history, including updates to labels, definitions, parent terms, synonyms, subsets, and obsoletion status. It is a best-effort reconstruction and may not include every change to a term. Since only history from GitHub is included at the moment, any term added before the migration from SVN to Git will show as being created in 2016. This will be addressed once SVN history is incorporated.

Date	Change	Summary	Evidence
2021-07-12	definition changed	Definition updated Before: A polymorphic pseudogene in the reference genome, containing a retained intron, known to be intact in the genomes of other individuals of the same species. The annotation process has confirmed that the pseudogenisation event is not a genomic sequencing error. After: A polymorphic pseudogene in the reference genome, containing a retained intron, known to be intact in the genomes of other individuals of the same species. The annotation process has confirmed that the pseudogenisation event is not a genomic sequencing error.	`795c410`
2016-12-05	created	Term introduced into the editable ontology history Initial label: polymorphic_pseudogene_with_retained_intron Initial definition captured. Initial parent: SO:0001841	`92e3cae`