Sequence Ontology

A shared vocabulary for biological sequence features and annotations

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CRE

SO:0001843

Definition: MERGED DEFINITION: TARGET DEFINITION: A promoter element with consensus sequence TGACGTCA; bound by the ATF/CREB family of transcription factors. -------------------- SOURCE DEFINITION: A promoter element that contains a core sequence TGACGT, bound by a protein complex that regulates transcription of genes encoding PKA pathway components.

Comments and references

New synonym Atf1/Pcr1 recognition motif added in response to Antonia Lock GitHub Issue Request #437, PMID:15716492

Definition references: PMID:11483355, PMID:11483993, PMID:15448137

Synonyms

ScopeValue
exactATF/CRE site
exactAtf1/Pcr1 recognition motif
exactM26 binding site
exactM26_binding_site
exactcyclic AMP response element
exactm26 site

Identifiers and subsets

Accession: SO:0001843

Persistent URL: http://purl.obolibrary.org/obo/SO_0001843

Alternate IDs: SO:0001900

Subsets: None

Cross references: None

History summary

Term history is reconstructed from the Git-era ontology files by comparing ontology classes across revisions. Earlier SVN-era changes will be added at a future date.

First seen in Git-era editable history: 2016-12-05 in commit 92e3cae

Most recent Git-era change: 2020-05-27 in commit b13f9f0

Number of changes: 8

Ontology neighborhood diagram

Ontology neighborhood for SO:0001843 Ontology neighborhood graph for SO:0001843 CRE. Parent, child, and related nodes can be activated to open their term pages. SO:0001659 promoter_element SO:0001659 promoter_element SO:0001843 CRE SO:0001843 CRE
The local DAG shows nearby parent, child, and related terms. Each node links to its own term page.

Relationships

Parents

Children

None recorded in the current release neighborhood.

Change history

This timeline summarizes changes identified in SO’s GitHub commit history, including updates to labels, definitions, parent terms, synonyms, subsets, and obsoletion status. It is a best-effort reconstruction and may not include every change to a term. Since only history from GitHub is included at the moment, any term added before the migration from SVN to Git will show as being created in 2016. This will be addressed once SVN history is incorporated.

DateChangeSummaryEvidence
2020-05-27editedTerm stanza touched in repository historyb13f9f0
2020-04-22synonym addedSynonym added: Atf1/Pcr1 recognition motif
Scope: exact
775d49a
#437
2019-07-31alt id addedAlternate ID added: SO:0001900c359528
2019-07-31synonym addedSynonym added: M26_binding_site
Scope: exact
c359528
2019-07-31synonym addedSynonym added: m26 site
Scope: exact
c359528
2019-07-31synonym addedSynonym added: M26 binding site
Scope: exact
c359528
2019-07-31definition changedDefinition updated
Before: A promoter element with consensus sequence TGACGTCA; bound by the ATF/CREB family of transcription factors.
After: MERGED DEFINITION:\nTARGET DEFINITION: A promoter element with consensus sequence TGACGTCA; bound by the ATF/CREB family of transcription factors.\n--------------------\nSOURCE DEFINITION: A promoter element that contains a core sequence TGACGT, bound by a protein complex that regulates transcription of genes encoding PKA pathway components.
c359528
2016-12-05createdTerm introduced into the editable ontology history
Initial label: CRE
Initial definition captured.
Initial parent: SO:0001659
92e3cae