NMD_transcript
SO:0002114
Definition: A protein coding transcript that contains a CDS but has one or more splice junctions >50bp downstream of stop codon, making it susceptible to nonsense mediated decay.
Comments and references
Term added as part of collaboration with Gencode, adding biotypes used in annotation.
Definition references: GENCODE:http://www.gencodegenes.org/gencode_biotypes.html
Synonyms
| Scope | Value |
|---|---|
| exact | NMD transcript |
| exact | nonsense mediated decay transcript |
| exact | protein_coding_NMD |
Identifiers and subsets
Accession: SO:0002114
Persistent URL: http://purl.obolibrary.org/obo/SO_0002114
Alternate IDs: None
Subsets: None
Cross references: http://www.gencodegenes.org/gencode_biotypes.html
History summary
Term history is reconstructed from the Git-era ontology files by comparing ontology classes across revisions. Earlier SVN-era changes will be added at a future date.
First seen in Git-era editable history: 2016-12-05 in commit 92e3cae
Most recent Git-era change: 2016-12-05 in commit 92e3cae
Number of changes: 1
Ontology neighborhood diagram
Relationships
Change history
This timeline summarizes changes identified in SO’s GitHub commit history, including updates to labels, definitions, parent terms, synonyms, subsets, and obsoletion status. It is a best-effort reconstruction and may not include every change to a term. Since only history from GitHub is included at the moment, any term added before the migration from SVN to Git will show as being created in 2016. This will be addressed once SVN history is incorporated.
| Date | Change | Summary | Evidence |
|---|---|---|---|
| 2016-12-05 | created | Term introduced into the editable ontology history Initial label: NMD_transcript Initial definition captured. Initial parent: SO:0000120 | 92e3cae |