NMD_polymorphic_pseudogene_transcript
SO:0002118
Definition: A polymorphic pseudogene transcript that contains a CDS but has one or more splice junctions >50bp downstream of stop codon. Premature stop codon is not introduced, directly or indirectly, as a result of the variation i.e. must be present in both protein_coding and pseudogenic alleles.
Comments and references
Term added as part of collaboration with Gencode, adding biotypes used in annotation.
Definition references: GENCODE:http://www.gencodegenes.org/gencode_biotypes.html
Synonyms
| Scope | Value |
|---|---|
| exact | NMD polymorphic pseudogene transcript |
| exact | nonsense_mediated_decay_polymorphic_pseudogene |
Identifiers and subsets
Accession: SO:0002118
Persistent URL: http://purl.obolibrary.org/obo/SO_0002118
Alternate IDs: None
Subsets: None
Cross references: None
History summary
Term history is reconstructed from the Git-era ontology files by comparing ontology classes across revisions. Earlier SVN-era changes will be added at a future date.
First seen in Git-era editable history: 2016-12-05 in commit 92e3cae
Most recent Git-era change: 2016-12-05 in commit 92e3cae
Number of changes: 1
Ontology neighborhood diagram
Relationships
Parents
Children
None recorded in the current release neighborhood.
Change history
This timeline summarizes changes identified in SO’s GitHub commit history, including updates to labels, definitions, parent terms, synonyms, subsets, and obsoletion status. It is a best-effort reconstruction and may not include every change to a term. Since only history from GitHub is included at the moment, any term added before the migration from SVN to Git will show as being created in 2016. This will be addressed once SVN history is incorporated.
| Date | Change | Summary | Evidence |
|---|---|---|---|
| 2016-12-05 | created | Term introduced into the editable ontology history Initial label: NMD_polymorphic_pseudogene_transcript Initial definition captured. Initial parent: SO:0002114 | 92e3cae |