LARD
SO:0002260
Definition: Large Retrotransposon Derivative elements are long-terminal repeats that contain reverse transcriptase priming sites and are conserved in sequence but contain no open reading frames encoding typical retrotransposon proteins . The LARDs identified in barley and other Triticeae have LTRs ~5.5 kb and an interal domain of ~3.5 kb. LARDs lack coding domains and thus do not encode proteins.
Comments and references
Added as per GitHub Issue Request #429 (https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/429)
Definition references: PMID:15082561
Synonyms
| Scope | Value |
|---|---|
| exact | Large Retrotransposon Derivative |
| exact | large_retrotransposon_derivative |
Identifiers and subsets
Accession: SO:0002260
Persistent URL: http://purl.obolibrary.org/obo/SO_0002260
Alternate IDs: None
Subsets: None
Cross references: None
History summary
Term history is reconstructed from the Git-era ontology files by comparing ontology classes across revisions. Earlier SVN-era changes will be added at a future date.
First seen in Git-era editable history: 2020-05-27 in commit d41b89f
Most recent Git-era change: 2020-05-27 in commit d41b89f
Number of changes: 1
Ontology neighborhood diagram
Relationships
Parents
Children
None recorded in the current release neighborhood.
Change history
This timeline summarizes changes identified in SO’s GitHub commit history, including updates to labels, definitions, parent terms, synonyms, subsets, and obsoletion status. It is a best-effort reconstruction and may not include every change to a term. Since only history from GitHub is included at the moment, any term added before the migration from SVN to Git will show as being created in 2016. This will be addressed once SVN history is incorporated.
| Date | Change | Summary | Evidence |
|---|---|---|---|
| 2020-05-27 | created | Term introduced into the editable ontology history Initial label: LARD Initial definition captured. Initial parent: SO:0000186 | d41b89f#429 |