Sequence Ontology

A shared vocabulary for biological sequence features and annotations

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LTR_retrotransposon

SO:0000186

Definition: A retrotransposon flanked by long terminal repeat sequences.

Comments and references

Definition references: SO:ke

Synonyms

ScopeValue
exactLTR retrotransposon
exactlong terminal repeat retrotransposon

Identifiers and subsets

Accession: SO:0000186

Persistent URL: http://purl.obolibrary.org/obo/SO_0000186

Alternate IDs: None

Subsets: None

Cross references: None

History summary

Term history is reconstructed from the Git-era ontology files by comparing ontology classes across revisions. Earlier SVN-era changes will be added at a future date.

First seen in Git-era editable history: 2016-12-05 in commit 92e3cae

Most recent Git-era change: 2016-12-05 in commit 92e3cae

Number of changes: 1

Ontology neighborhood diagram

Ontology neighborhood for SO:0000186 Ontology neighborhood graph for SO:0000186 LTR_retrotransposon. Parent, child, and related nodes can be activated to open their term pages. SO:0000180 retrotransposon SO:0000180 retrotransposon SO:0000186 LTR_retrotransposon SO:0000186 LTR_retrotransposon SO:0002264 Copia_LTR_retrotransposon SO:0002264 Copia_LTR_retrotransposon SO:0002265 Gypsy_LTR_retrotransposon SO:0002265 Gypsy_LTR_retrotransposon SO:0002260 LARD SO:0002260 LARD SO:0002261 TRIM SO:0002261 TRIM SO:0002268 Endogenous_Retrovirus_LTR_retrotransposon SO:0002268 Endogenous_Retrovirus_LTR_retrotransposon SO:0002266 Bel_Pao_LTR_retrotransposon SO:0002266 Bel_Pao_LTR_retrotransposon SO:0005850 primer_binding_site SO:0005850 primer_binding_site SO:0000286 long_terminal_repeat SO:0000286 long_terminal_repeat SO:0000435 RR_tract SO:0000435 RR_tract SO:0001788 U_box SO:0001788 U_box
The local DAG shows nearby parent, child, and related terms. Each node links to its own term page.

Relationships

Parents

Children

http://purl.obolibrary.org/obo/so#part_of (incoming)

Change history

This timeline summarizes changes identified in SO’s GitHub commit history, including updates to labels, definitions, parent terms, synonyms, subsets, and obsoletion status. It is a best-effort reconstruction and may not include every change to a term. Since only history from GitHub is included at the moment, any term added before the migration from SVN to Git will show as being created in 2016. This will be addressed once SVN history is incorporated.

DateChangeSummaryEvidence
2016-12-05createdTerm introduced into the editable ontology history
Initial label: LTR_retrotransposon
Initial definition captured.
Initial parent: SO:0000180
92e3cae