Copia_LTR_retrotransposon
SO:0002264
Definition: LTR retrotransposons in the Copia superfamily contain elements coding for specific proteins in this order: GAG, AP, INT, RT, RH. GAG is a structural protein for virus-like particles. AP is aspartic proteinase. INT is a DDE integrase. RT is a reverse transcriptase. RH is RNAse H.
Comments and references
Added as per GitHub Issue Request #488 (https://github.com/The-Sequence-Ontology/SO-Ontologies/issues/488)
Definition references: PMID:17984973
Synonyms
| Scope | Value |
|---|---|
| exact | Copia LTR retrotransposon |
| exact | RLC retrotransposon |
| exact | Ty1 retrotransposon |
Identifiers and subsets
Accession: SO:0002264
Persistent URL: http://purl.obolibrary.org/obo/SO_0002264
Alternate IDs: None
Subsets: None
Cross references: None
History summary
Term history is reconstructed from the Git-era ontology files by comparing ontology classes across revisions. Earlier SVN-era changes will be added at a future date.
First seen in Git-era editable history: 2020-06-25 in commit d3cf127
Most recent Git-era change: 2020-06-25 in commit d3cf127
Number of changes: 1
Ontology neighborhood diagram
Relationships
Parents
Children
None recorded in the current release neighborhood.
Change history
This timeline summarizes changes identified in SO’s GitHub commit history, including updates to labels, definitions, parent terms, synonyms, subsets, and obsoletion status. It is a best-effort reconstruction and may not include every change to a term. Since only history from GitHub is included at the moment, any term added before the migration from SVN to Git will show as being created in 2016. This will be addressed once SVN history is incorporated.
| Date | Change | Summary | Evidence |
|---|---|---|---|
| 2020-06-25 | created | Term introduced into the editable ontology history Initial label: Copia_LTR_retrotransposon Initial definition captured. Initial parent: SO:0000186 | d3cf127#488 |