Sequence Ontology

A shared vocabulary for biological sequence features and annotations

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core_promoter_element

SO:0002309

Definition: An element that always exists within the promoter region of a gene. When multiple transcripts exist for a gene, the separate transcripts may have separate core_promoter_elements.

Comments and references

Added by Dave to be consistent with other ontologies updated with GREEKC initiative.

Definition references: GREEKC:rl

Synonyms

ScopeValue
exactcore promoter element

Identifiers and subsets

Accession: SO:0002309

Persistent URL: http://purl.obolibrary.org/obo/SO_0002309

Alternate IDs: None

Subsets: None

Cross references: None

History summary

Term history is reconstructed from the Git-era ontology files by comparing ontology classes across revisions. Earlier SVN-era changes will be added at a future date.

First seen in Git-era editable history: 2020-08-13 in commit 56fcc6a

Most recent Git-era change: 2020-08-13 in commit 56fcc6a

Number of changes: 1

Ontology neighborhood diagram

Ontology neighborhood for SO:0002309 Ontology neighborhood graph for SO:0002309 core_promoter_element. Parent, child, and related nodes can be activated to open their term pages. SO:0001659 promoter_element SO:0001659 promoter_element SO:0002309 core_promoter_element SO:0002309 core_promoter_element SO:0001660 core_eukaryotic_promoter_element SO:0001660 core_eukaryotic_promoter_element SO:0002312 core_prokaryotic_promoter_element SO:0002312 core_prokaryotic_promoter_element SO:0002313 core_viral_promoter_element SO:0002313 core_viral_promoter_element SO:0000315 TSS SO:0000315 TSS SO:0000167 promoter SO:0000167 promoter
The local DAG shows nearby parent, child, and related terms. Each node links to its own term page.

Relationships

Parents

Children

http://purl.obolibrary.org/obo/so#part_of (outgoing)

Change history

This timeline summarizes changes identified in SO’s GitHub commit history, including updates to labels, definitions, parent terms, synonyms, subsets, and obsoletion status. It is a best-effort reconstruction and may not include every change to a term. Since only history from GitHub is included at the moment, any term added before the migration from SVN to Git will show as being created in 2016. This will be addressed once SVN history is incorporated.

DateChangeSummaryEvidence
2020-08-13createdTerm introduced into the editable ontology history
Initial label: core_promoter_element
Initial definition captured.
Initial parent: SO:0001659
56fcc6a